open-discussion > Clinical ToolBox Error - Failed: MR segment-normalize
Apr 29, 2024  12:04 PM | Daniela SALCEDO-POSSO
Clinical ToolBox Error - Failed: MR segment-normalize

Hi,


I'm trying to use MR segment-normalize some T1s with the respective lesion mask (made in ITK-SNAP) through the Clinical Toolbox in SPM12, but it seems that something is not running well, I have obtained this:


Completed                               :          16:44:25 - 28/04/2024
28-Apr-2024 16:44:43 - Done    'Old Segment'
28-Apr-2024 16:44:43 - Done


Conversion Normalise:Write -> Old Normalise:Write
28-Apr-2024 16:44:44 - Failed  'MR segment-normalize'
Error using subsasgn_check
Input file lists to cfg_getfile('filter',...) must be a column cellstr.
In file "subsasgn_check.m" (v2512), function "subsasgn_check" at line 49.
In file "subsasgn.m" (???), function "subsasgn" at line 80.
In file "initialise.m" (v4898), function "initialise" at line 48.
In file "initialise.m" (v4898), function "initialise_job" at line 54.
In file "initialise.m" (v4898), function "initialise" at line 27.
In file "initialise.m" (v4898), function "initialise_job" at line 60.
In file "initialise.m" (v4898), function "initialise" at line 31.
In file "initialise.m" (v4898), function "initialise_job" at line 54.
In file "initialise.m" (v4898), function "initialise" at line 27.
In file "initialise.m" (v4898), function "initialise_job" at line 81.
In file "initialise.m" (v4898), function "initialise" at line 34.
In file "initialise.m" (v4898), function "initialise_job" at line 81.
In file "initialise.m" (v4898), function "initialise" at line 34.
In file "initialise.m" (v4898), function "initialise_job" at line 81.
In file "initialise.m" (v4898), function "initialise" at line 34.
In file "initialise.m" (v4898), function "initialise_job" at line 116.
In file "initialise.m" (v4898), function "initialise" at line 31.
In file "cfg_util.m" (v7345), function "@(ucjob)initialise(cjd,ucjob,false)" at line 1552.
In file "cfg_util.m" (v7345), function "local_initjob" at line 1552.
In file "cfg_util.m" (v7345), function "cfg_util" at line 815.
In file "spm_jobman.m" (v7744), function "spm_jobman" at line 246.
In file "clinical_mrnormseg.m" (???), function "clinical_mrnormseg" at line 231.
In file "clinical_mrnormseg_job.m" (???), function "clinical_mrnormseg_job" at line 33.
In file "tbx_cfg_clinical.m" (???), function "clinical_local_mrnormseg" at line 315.


The following modules did not run:
Failed: MR segment-normalize


It's the first time that I use this toolbox, so, I also tried with the tutorial, but the same happened.


I would be really grateful for the help you could provide me.