Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
858033
2
Nilearn
485494
3
ITK-SNAP
408617
4
FCP/INDI PRIVATE SITE
276789
5
1000 Functional Connectomes Project
171120
6
IIT Human Brain Atlas (v.5.0)
149257
7
MRIcroGL
146811
8
CONN : functional connectivity toolbox
145828
9
DTI-TK
87981
10
BrainNet Viewer
83215
11
IBSR
70596
12
Multi-Modal MRI Reproducibility Resource
59172
13
WFU_PickAtlas
58823
14
BioImage Suite
52481
15
age-ility
48240
16
BXH/XCEDE Tools
44083
17
PANDA: a pipeline tool for diffusion MRI
40845
18
EEGLAB
39651
19
Solar Eclipse Imaging Genetics tools
39189
20
The Neuro Bureau
38222
21
JIST: Java Image Science Toolkit
38021
22
FreeSurfer
37842
23
Waxholm Space Atlas of the Sprague Dawley Rat Brain
37528
24
TOADS-CRUISE Brain Segmentation Tools
36044
25
GIFTI
34968
26
fNIRS Data Analysis Environment
32750
27
Functional Imaging BIRN
32465
28
Generalized PPI Toolbox
30484
29
NITRC Computational Environment (NITRC-CE)
28563
30
3T DWI test-retest reliability dataset
28046
31
BrainMap Database
24965
32
NIDB - Neuroinformatics Database
23879
33
BIDScoin
23603
34
Homer2
22917
35
NeuroDebian
21371
36
Network-Based Statistic (NBS)
20863
37
fMRI-CPCA
20637
38
Anima
20614
39
BrainVisa Morphologist extensions
20361
40
NYU CSC TestRetest
19759
41
UNC 0-1-2 Infant Atlases
18201
42
Mango
17361
43
MITK Diffusion
17081
44
XNAT Extras
17031
45
Neuroimaging Made Easy Blog
16075
46
Automatic Registration Toolbox
15350
47
GRETNA
15073
48
3D Slicer
14463
49
Data Format Tools
14458
50
Surf Ice
14234
51
Freesurfer fsaverage
13887
52
Talairach Daemon
13839
53
Spatially Constrained Parcellation
13753
54
QuickNII - Serial section aligner to volumetric atlases
13709
55
Diffusion Toolkit / TrackVis
13664
56
Brainstorm
13489
57
Brain Biomechanics Imaging Resources
13457
58
Vaa3D and Vaa3D-Neuron
13410
59
SRI24 Atlas: Normal Adult Brain Anatomy
12725
60
DCP：Diffusion Connectome Pipeline
12583
61
dcm2nii
12538
62
libminc - Medical Image NetCDF library
12509
63
CBS High-Res Brain Processing Tools
12492
64
Melbourne Subcortex Atlas
12323
65
Group ICA Toolbox (GIFT and EEGIFT)
12295
66
MRtrix
12268
67
BrainMask Volume Processing Tool
11809
68
Computational Morphometry Toolkit (CMTK)
11579
69
FSL
11409
70
Artifact Detection Tools (ART)
11370
71
3DSlicerLupusLesionModule
11360
72
DWI/DTI Quality Control Tool: DTIPrep
11106
73
CANDI Neuroimaging Access Point
11018
74
Subject Order-Independent Group ICA
10918
75
BrainSuite
10849
76
TumorSim
10812
77
Human Imaging Database (HID)
10808
78
2008 MICCAI MS Lesion Segmentation Challenge
10785
79
BrainVISA
10770
80
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
10438
81
Hammer And WML Modules for 3D Slicer
10378
82
NeuroImaging Analysis Kit (NIAK)
10224
83
NODDI Matlab Toolbox
9695
84
SPM for fNIRS toolbox
9671
85
Source Information Flow Toolbox
9639
86
Diffusional Kurtosis Estimator
9513
87
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
9303
88
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
9292
89
4D UNC Neonatal and Infant Cortical Surface Atlases
9235
90
NIRS-KIT: A MATLAB toolbox for both task and resting-state fNIRS data analysis
9126
91
NIfTI
9023
92
CBICA: Cancer Imaging Phenomics Toolkit (CaPTk)
8892
93
ENIGMA-DTI pipeline
8770
94
Task Independent Fluctuations Discussion
8568
95
SPHARM-PDM Toolbox
8523
96
MARS (Multi-Atlas Robust Segmentation)
8282
97
Robust Brain Extraction (ROBEX)
8178
98
Awake Rat rsfMRI Database
8109
99
iBEAT
7948
100
Center for Functional Neuroimaging Tech
7696