Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
860632
2
Nilearn
488616
3
ITK-SNAP
410017
4
FCP/INDI PRIVATE SITE
279569
5
1000 Functional Connectomes Project
171336
6
IIT Human Brain Atlas (v.5.0)
150259
7
MRIcroGL
148160
8
CONN : functional connectivity toolbox
146677
9
DTI-TK
88131
10
BrainNet Viewer
83915
11
IBSR
70778
12
Multi-Modal MRI Reproducibility Resource
59422
13
WFU_PickAtlas
59085
14
BioImage Suite
54028
15
age-ility
48601
16
BXH/XCEDE Tools
44274
17
PANDA: a pipeline tool for diffusion MRI
41065
18
EEGLAB
39662
19
Solar Eclipse Imaging Genetics tools
39610
20
The Neuro Bureau
38446
21
JIST: Java Image Science Toolkit
38333
22
Waxholm Space Atlas of the Sprague Dawley Rat Brain
38080
23
FreeSurfer
37842
24
TOADS-CRUISE Brain Segmentation Tools
36116
25
GIFTI
35169
26
fNIRS Data Analysis Environment
32965
27
Functional Imaging BIRN
32704
28
Generalized PPI Toolbox
30667
29
NITRC Computational Environment (NITRC-CE)
28713
30
3T DWI test-retest reliability dataset
28313
31
BIDScoin
27198
32
BrainMap Database
25095
33
NIDB - Neuroinformatics Database
24918
34
Homer2
23082
35
NeuroDebian
21516
36
Network-Based Statistic (NBS)
21063
37
fMRI-CPCA
20892
38
Anima
20814
39
BrainVisa Morphologist extensions
20498
40
NYU CSC TestRetest
19837
41
UNC 0-1-2 Infant Atlases
18346
42
Mango
17418
43
XNAT Extras
17229
44
MITK Diffusion
17132
45
Neuroimaging Made Easy Blog
16132
46
Automatic Registration Toolbox
15431
47
GRETNA
15175
48
Data Format Tools
14588
49
3D Slicer
14518
50
Surf Ice
14358
51
QuickNII - Serial section aligner to volumetric atlases
14050
52
Brain Biomechanics Imaging Resources
13930
53
Talairach Daemon
13912
54
Freesurfer fsaverage
13891
55
Spatially Constrained Parcellation
13815
56
Diffusion Toolkit / TrackVis
13778
57
Vaa3D and Vaa3D-Neuron
13513
58
Brainstorm
13505
59
Melbourne Subcortex Atlas
12799
60
SRI24 Atlas: Normal Adult Brain Anatomy
12790
61
DCP：Diffusion Connectome Pipeline
12732
62
CBS High-Res Brain Processing Tools
12626
63
dcm2nii
12560
64
libminc - Medical Image NetCDF library
12524
65
Group ICA Toolbox (GIFT and EEGIFT)
12382
66
MRtrix
12294
67
BrainMask Volume Processing Tool
11917
68
Computational Morphometry Toolkit (CMTK)
11710
69
FSL
11477
70
3DSlicerLupusLesionModule
11445
71
Artifact Detection Tools (ART)
11388
72
DWI/DTI Quality Control Tool: DTIPrep
11140
73
CANDI Neuroimaging Access Point
11115
74
BrainSuite
10996
75
Subject Order-Independent Group ICA
10974
76
Human Imaging Database (HID)
10881
77
TumorSim
10865
78
BrainVISA
10798
79
2008 MICCAI MS Lesion Segmentation Challenge
10792
80
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
10476
81
Hammer And WML Modules for 3D Slicer
10462
82
NeuroImaging Analysis Kit (NIAK)
10256
83
NODDI Matlab Toolbox
9747
84
SPM for fNIRS toolbox
9730
85
Source Information Flow Toolbox
9656
86
Diffusional Kurtosis Estimator
9533
87
4D UNC Neonatal and Infant Cortical Surface Atlases
9430
88
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
9386
89
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
9341
90
NIRS-KIT: A MATLAB toolbox for both task and resting-state fNIRS data analysis
9304
91
NIfTI
9084
92
CBICA: Cancer Imaging Phenomics Toolkit (CaPTk)
8940
93
ENIGMA-DTI pipeline
8892
94
Task Independent Fluctuations Discussion
8702
95
SPHARM-PDM Toolbox
8530
96
MARS (Multi-Atlas Robust Segmentation)
8382
97
Awake Rat rsfMRI Database
8328
98
Robust Brain Extraction (ROBEX)
8224
99
Multimodal Visual Consciousness Study Dataset
8049
100
iBEAT
7997