Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
860385
2
Nilearn
488348
3
ITK-SNAP
409861
4
FCP/INDI PRIVATE SITE
279249
5
1000 Functional Connectomes Project
171312
6
IIT Human Brain Atlas (v.5.0)
150207
7
MRIcroGL
148019
8
CONN : functional connectivity toolbox
146568
9
DTI-TK
88120
10
BrainNet Viewer
83824
11
IBSR
70767
12
Multi-Modal MRI Reproducibility Resource
59403
13
WFU_PickAtlas
59061
14
BioImage Suite
53999
15
age-ility
48576
16
BXH/XCEDE Tools
44270
17
PANDA: a pipeline tool for diffusion MRI
41044
18
EEGLAB
39660
19
Solar Eclipse Imaging Genetics tools
39561
20
The Neuro Bureau
38412
21
JIST: Java Image Science Toolkit
38308
22
Waxholm Space Atlas of the Sprague Dawley Rat Brain
38029
23
FreeSurfer
37842
24
TOADS-CRUISE Brain Segmentation Tools
36106
25
GIFTI
35154
26
fNIRS Data Analysis Environment
32961
27
Functional Imaging BIRN
32684
28
Generalized PPI Toolbox
30658
29
NITRC Computational Environment (NITRC-CE)
28666
30
3T DWI test-retest reliability dataset
28301
31
BIDScoin
26602
32
BrainMap Database
25075
33
NIDB - Neuroinformatics Database
24733
34
Homer2
23066
35
NeuroDebian
21504
36
Network-Based Statistic (NBS)
21046
37
fMRI-CPCA
20882
38
Anima
20803
39
BrainVisa Morphologist extensions
20489
40
NYU CSC TestRetest
19833
41
UNC 0-1-2 Infant Atlases
18330
42
Mango
17415
43
XNAT Extras
17193
44
MITK Diffusion
17120
45
Neuroimaging Made Easy Blog
16125
46
Automatic Registration Toolbox
15419
47
GRETNA
15151
48
Data Format Tools
14580
49
3D Slicer
14508
50
Surf Ice
14338
51
QuickNII - Serial section aligner to volumetric atlases
14013
52
Talairach Daemon
13909
53
Brain Biomechanics Imaging Resources
13897
54
Freesurfer fsaverage
13891
55
Spatially Constrained Parcellation
13811
56
Diffusion Toolkit / TrackVis
13770
57
Brainstorm
13504
58
Vaa3D and Vaa3D-Neuron
13503
59
SRI24 Atlas: Normal Adult Brain Anatomy
12782
60
Melbourne Subcortex Atlas
12750
61
DCP：Diffusion Connectome Pipeline
12718
62
CBS High-Res Brain Processing Tools
12621
63
dcm2nii
12558
64
libminc - Medical Image NetCDF library
12521
65
Group ICA Toolbox (GIFT and EEGIFT)
12369
66
MRtrix
12293
67
BrainMask Volume Processing Tool
11903
68
Computational Morphometry Toolkit (CMTK)
11696
69
FSL
11464
70
3DSlicerLupusLesionModule
11442
71
Artifact Detection Tools (ART)
11386
72
DWI/DTI Quality Control Tool: DTIPrep
11133
73
CANDI Neuroimaging Access Point
11108
74
BrainSuite
10977
75
Subject Order-Independent Group ICA
10970
76
Human Imaging Database (HID)
10875
77
TumorSim
10860
78
BrainVISA
10798
79
2008 MICCAI MS Lesion Segmentation Challenge
10792
80
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
10470
81
Hammer And WML Modules for 3D Slicer
10454
82
NeuroImaging Analysis Kit (NIAK)
10256
83
NODDI Matlab Toolbox
9741
84
SPM for fNIRS toolbox
9724
85
Source Information Flow Toolbox
9653
86
Diffusional Kurtosis Estimator
9531
87
4D UNC Neonatal and Infant Cortical Surface Atlases
9421
88
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
9382
89
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
9337
90
NIRS-KIT: A MATLAB toolbox for both task and resting-state fNIRS data analysis
9266
91
NIfTI
9079
92
CBICA: Cancer Imaging Phenomics Toolkit (CaPTk)
8937
93
ENIGMA-DTI pipeline
8885
94
Task Independent Fluctuations Discussion
8692
95
SPHARM-PDM Toolbox
8530
96
MARS (Multi-Atlas Robust Segmentation)
8380
97
Awake Rat rsfMRI Database
8313
98
Robust Brain Extraction (ROBEX)
8220
99
Multimodal Visual Consciousness Study Dataset
8031
100
iBEAT
7995